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Lj3g3v2575530.1

Overview

Field Value
Gene ID Lj3g3v2575530
Transcript ID Lj3g3v2575530.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pectinesterase 3-like [Cicer arietinum] gi|502156632|ref|XP_004510571.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 28 28 – –
PANTHER
PTHR31707:SF42
26 464 439 2.50E-249 –
PANTHER
PTHR31707
26 464 439 2.50E-249 –
Phobius
TRANSMEMBRANE
29 52 24 – –
TMHMM
TMhelix
30 52 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
53 464 412 – –
TIGRFAM
TIGR01614
58 227 170 6.40E-23
IPR006501
SMART
SM00856
70 224 155 5.20E-30
IPR006501
Gene3D
G3DSA:1.20.140.40
74 228 155 3.00E-28
IPR006501
Pfam
PF04043
75 224 150 1.40E-23
IPR006501
SUPERFAMILY
SSF101148
75 229 155 1.29E-26
IPR006501
CDD
cd15798
77 230 154 6.22E-41 –
Gene3D
G3DSA:2.160.20.10
264 464 201 5.90E-76
IPR012334
Pfam
PF01095
265 464 200 1.20E-97
IPR000070
SUPERFAMILY
SSF51126
265 464 200 3.77E-74
IPR011050
ProSitePatterns
PS00503
409 418 10 –
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj3g3v2575530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2575530.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.