Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v2838460.1

Overview

Field Value
Gene ID Lj3g3v2838460
Transcript ID Lj3g3v2838460.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
4 210 207 5.20E-74
IPR027417
PANTHER
PTHR24073:SF553
4 212 209 2.40E-160 –
PANTHER
PTHR24073
4 212 209 2.40E-160 –
SUPERFAMILY
SSF52540
6 184 179 1.15E-59
IPR027417
ProSiteProfiles
PS51419
7 210 204 35.984 –
CDD
cd01868
9 173 165 4.22E-128 –
SMART
SM00173
9 175 167 5.80E-29 –
TIGRFAM
TIGR00231
10 167 158 1.70E-39
IPR005225
SMART
SM00175
12 175 164 1.10E-110 –
PRINTS
PR00449
12 33 22 5.70E-42 –
Pfam
PF00071
13 173 161 2.50E-62
IPR001806
SMART
SM00174
14 171 158 1.00E-11 –
SMART
SM00176
17 204 188 4.30E-07 –
PRINTS
PR00449
35 51 17 5.70E-42 –
PRINTS
PR00449
53 75 23 5.70E-42 –
PRINTS
PR00449
115 128 14 5.70E-42 –
PRINTS
PR00449
150 172 23 5.70E-42 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v2838460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2838460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.