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Lj3g3v2886960.1

Overview

Field Value
Gene ID Lj3g3v2886960
Transcript ID Lj3g3v2886960.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription repressor MYB6-like [Glycine max] gi|356515230|ref|XP_003526304.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 116 116 3.20E-123 –
PANTHER
PTHR10641:SF584
1 116 116 3.20E-123 –
ProSiteProfiles
PS51294
9 61 53 13.766
IPR017930
SUPERFAMILY
SSF46689
11 108 98 9.77E-29
IPR009057
SMART
SM00717
13 63 51 9.40E-09
IPR001005
Pfam
PF00249
14 61 48 1.90E-12
IPR001005
Gene3D
G3DSA:1.10.10.60
15 68 54 7.70E-23
IPR009057
CDD
cd00167
16 61 46 2.38E-08 –
ProSiteProfiles
PS51294
62 116 55 26.92
IPR017930
SMART
SM00717
66 114 49 5.00E-18
IPR001005
Pfam
PF00249
67 110 44 3.00E-16
IPR001005
CDD
cd00167
69 112 44 7.42E-13 –
Gene3D
G3DSA:1.10.10.60
69 116 48 2.00E-25
IPR009057
MobiDBLite
mobidb-lite
118 147 30 – –
PANTHER
PTHR10641:SF584
145 318 174 3.20E-123 –
PANTHER
PTHR10641
145 318 174 3.20E-123 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v2886960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2886960.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.