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Lj3g3v2908680.1

Overview

Field Value
Gene ID Lj3g3v2908680
Transcript ID Lj3g3v2908680.1
Lotus japonicus genome version MG20 v3.0
Description serine protease [Arabidopsis thaliana] gi|18402981|ref|NP_565745.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 182 182 – –
CDD
cd06163
94 210 117 7.03E-38 –
Pfam
PF02163
98 434 337 8.40E-61
IPR008915
PANTHER
PTHR22939:SF97
133 186 54 2.00E-87 –
PANTHER
PTHR22939
133 186 54 2.00E-87 –
SUPERFAMILY
SSF50156
178 281 104 2.37E-12
IPR001478
Gene3D
G3DSA:2.30.42.10
182 290 109 1.80E-14
IPR001478
Phobius
TRANSMEMBRANE
183 207 25 – –
TMHMM
TMhelix
184 206 23 – –
SMART
SM00228
206 280 75 1.20E-08
IPR001478
CDD
cd00989
206 289 84 3.65E-12 –
ProSiteProfiles
PS50106
208 279 72 10.014
IPR001478
Phobius
NON_CYTOPLASMIC_DOMAIN
208 422 215 – –
PANTHER
PTHR22939
213 448 236 2.00E-87 –
PANTHER
PTHR22939:SF97
213 448 236 2.00E-87 –
TMHMM
TMhelix
374 396 23 – –
Phobius
TRANSMEMBRANE
423 440 18 – –
TMHMM
TMhelix
423 440 18 – –
Phobius
CYTOPLASMIC_DOMAIN
441 453 13 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004222
Molecular function Metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v2908680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2908680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.