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PS50106

Source: ProSiteProfiles

Description

PDZ domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Associated Lotus transcripts 34

Transcript Name Description Predicted domains Domain count
Lj0g3v0228219.1
– PREDICTED: carboxyl-terminal-processing protease-like [Glycine max] gi|356534629|ref|XP_003535855.1|
Domains
19
Lj0g3v0251079.1
– PREDICTED: carboxyl-terminal-processing protease-like [Glycine max] gi|356574722|ref|XP_003555494.1|
Domains
15
Lj1g3v3641900.1
– PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic-like [Cicer arietinum] gi|502170387|ref|XP_004514819.1|
Domains
19
Lj1g3v4921060.1
– Trypsin family protein with PDZ domain isoform 2, partial [Theobroma cacao] gi|508719582|gb|EOY11479.1|
Domains
22
Lj1g3v4921060.2
– Os11g0246600 [Oryza sativa Japonica Group] gi|297611567|ref|NP_001067609.2|
Domains
14
Lj2g3v1012780.1
– PREDICTED: protease Do-like 1, chloroplastic-like [Cicer arietinum] gi|502090590|ref|XP_004489277.1|
Domains
21
Lj2g3v1058040.2
– PREDICTED: protease Do-like 8, chloroplastic-like [Glycine max] gi|356550813|ref|XP_003543778.1|
Domains
15
Lj2g3v2124630.1
– Rubredoxin family protein [Theobroma cacao] gi|508718096|gb|EOY09993.1|
Domains
15
Lj3g3v2908680.1
– Serine protease [Arabidopsis thaliana] gi|18402981|ref|NP_565745.1|
Domains
15
Lj4g3v2631020.1
– Carboxyl-terminal-processing protease [Medicago truncatula] gi|357519225|ref|XP_003629901.1|
Domains
20
Lj4g3v2666320.1
– Binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297847910|ref|XP_002891836.1|
Domains
13
Lj4g3v2666320.2
– SHOOT1 protein [Glycine max] gi|351722395|ref|NP_001235451.1|
Domains
12
Lj6g3v0436140.1
– PREDICTED: protease Do-like 7-like [Glycine max] gi|356539842|ref|XP_003538402.1|
Domains
15
LotjaGi1g1v0607500.1
– Phosphoglucan phosphatase LSF1; TAIR: AT3G01510.1 like SEX4 1; Swiss-Prot: sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic; TrEMBL-Plants: tr|K7MWV8|K7MWV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607500
Domains
22
LotjaGi1g1v0771600.1
– Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600
Domains
24
LotjaGi1g1v0771600.2
– Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600
Domains
24
LotjaGi2g1v0246100.1
– Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100
Domains
23
LotjaGi2g1v0246100.2
– Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100
Domains
23
LotjaGi2g1v0259100.1
– Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100
Domains
17
LotjaGi2g1v0259100.2
– Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100
Domains
23
LotjaGi2g1v0447900.1
– Rubredoxin family protein; TAIR: AT5G17170.1 rubredoxin family protein; Swiss-Prot: sp|O26258|RUBR_METTH Probable rubredoxin; TrEMBL-Plants: tr|I3TAC3|I3TAC3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0447900
Domains
15
LotjaGi3g1v0467200.1
– Membrane-associated zinc metalloprotease family protein, expressed; TAIR: AT2G32480.1 chloroplastic membrane metallo proteases; Swiss-Prot: sp|O80885|ARASP_ARATH Membrane metalloprotease ARASP, chloroplastic; TrEMBL-Plants: tr|V7AFZ2|V7AFZ2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0467200
Domains
17
LotjaGi4g1v0384000.1
– Carboxyl-terminal-processing protease; TAIR: AT5G46390.2 Peptidase S41 family protein; Swiss-Prot: sp|F4KHG6|CTPA1_ARATH Carboxyl-terminal-processing peptidase 1, chloroplastic; TrEMBL-Plants: tr|G7L820|G7L820_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi4g1v0384000
Domains
17
LotjaGi4g1v0384000.2
– Carboxyl-terminal-processing protease; TAIR: AT5G46390.2 Peptidase S41 family protein; Swiss-Prot: sp|F4KHG6|CTPA1_ARATH Carboxyl-terminal-processing peptidase 1, chloroplastic; TrEMBL-Plants: tr|G7L820|G7L820_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi4g1v0384000
Domains
22
LotjaGi4g1v0384000.3
– Carboxyl-terminal-processing protease; TAIR: AT5G46390.2 Peptidase S41 family protein; Swiss-Prot: sp|F4KHG6|CTPA1_ARATH Carboxyl-terminal-processing peptidase 1, chloroplastic; TrEMBL-Plants: tr|G7L820|G7L820_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi4g1v0384000
Domains
17
LotjaGi4g1v0386500.1
– Tetratricopeptide repeat protein 1; TAIR: AT1G55480.1 protein containing PDZ domain, a K-box domain, and a TPR region; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|B7FKN6|B7FKN6_MEDTR Tyrosine phosphatase, putative; Found in the gene: LotjaGi4g1v0386500
Domains
13
LotjaGi4g1v0386500.2
– Tetratricopeptide repeat protein 1; TAIR: AT1G55480.1 protein containing PDZ domain, a K-box domain, and a TPR region; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|B7FKN6|B7FKN6_MEDTR Tyrosine phosphatase, putative; Found in the gene: LotjaGi4g1v0386500
Domains
13
LotjaGi5g1v0147300.1
– Carboxyl-terminal-processing protease; TAIR: AT3G57680.1 Peptidase S41 family protein; Swiss-Prot: sp|F4J3G5|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic; TrEMBL-Plants: tr|A0A0L9TVD7|A0A0L9TVD7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0147300
Domains
22
LotjaGi5g1v0147300.2
– Carboxyl-terminal-processing protease; TAIR: AT3G57680.1 Peptidase S41 family protein; Swiss-Prot: sp|F4J3G5|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic; TrEMBL-Plants: tr|A0A072VIA3|A0A072VIA3_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi5g1v0147300
Domains
22
LotjaGi5g1v0147300.3
– Carboxyl-terminal-processing protease; TAIR: AT3G57680.1 Peptidase S41 family protein; Swiss-Prot: sp|F4J3G5|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic; TrEMBL-Plants: tr|A0A072VIA3|A0A072VIA3_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi5g1v0147300
Domains
22
LotjaGi5g1v0162100.1
– Carboxyl-terminal-processing protease; TAIR: AT4G17740.1 Peptidase S41 family protein; Swiss-Prot: sp|O23614|CTPA2_ARATH Carboxyl-terminal-processing peptidase 2, chloroplastic; TrEMBL-Plants: tr|A0A151T111|A0A151T111_CAJCA Carboxyl-terminal-processing protease; Found in the gene: LotjaGi5g1v0162100
Domains
21
LotjaGi5g1v0162100.2
– Carboxyl-terminal-processing protease; TAIR: AT4G17740.1 Peptidase S41 family protein; Swiss-Prot: sp|O23614|CTPA2_ARATH Carboxyl-terminal-processing peptidase 2, chloroplastic; TrEMBL-Plants: tr|K7LKB3|K7LKB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0162100
Domains
13
LotjaGi6g1v0060100.1
– DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100
Domains
20
LotjaGi6g1v0060100.2
– DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100
Domains
20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.94