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Lj3g3v2938470.1

Overview

Field Value
Gene ID Lj3g3v2938470
Transcript ID Lj3g3v2938470.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Glycine max] gi|356544768|ref|XP_003540819.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22849
1 411 411 2.90E-186 –
PANTHER
PTHR22849:SF0
1 411 411 2.90E-186 –
SUPERFAMILY
SSF57850
3 83 81 1.12E-25 –
ProSiteProfiles
PS51698
5 82 78 36.039
IPR003613
Gene3D
G3DSA:3.30.40.10
5 80 76 2.80E-26
IPR013083
Pfam
PF04564
6 80 75 5.60E-20
IPR003613
SMART
SM00504
9 75 67 4.80E-26
IPR003613
Gene3D
G3DSA:1.25.10.10
105 147 43 6.40E-11
IPR011989
SUPERFAMILY
SSF48371
109 147 39 1.94E-13
IPR016024
Gene3D
G3DSA:1.25.10.10
201 380 180 6.40E-11
IPR011989
SUPERFAMILY
SSF48371
202 389 188 1.94E-13
IPR016024

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v2938470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2938470.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.