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Lj3g3v2938490.1

Overview

Field Value
Gene ID Lj3g3v2938490
Transcript ID Lj3g3v2938490.1
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: BEL1-like homeodomain protein 1-like [Glycine max] gi|356544766|ref|XP_003540818.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
60 84 25 – –
SMART
SM00574
217 360 144 1.40E-55
IPR006563
PANTHER
PTHR11850:SF79
222 498 277 2.10E-222 –
Pfam
PF07526
222 359 138 8.60E-46
IPR006563
PANTHER
PTHR11850
222 498 277 2.10E-222 –
Coils
Coil
292 312 21 – –
ProSiteProfiles
PS50071
406 469 64 12.082
IPR001356
CDD
cd00086
409 470 62 1.71E-12 –
SMART
SM00389
409 473 65 7.80E-10
IPR001356
SUPERFAMILY
SSF46689
410 475 66 7.27E-17
IPR009057
Gene3D
G3DSA:1.10.10.60
412 475 64 1.90E-28
IPR009057
Pfam
PF05920
426 465 40 5.20E-18
IPR008422
Coils
Coil
472 499 28 – –
MobiDBLite
mobidb-lite
481 518 38 – –
PANTHER
PTHR11850:SF79
524 750 227 2.10E-222 –
PANTHER
PTHR11850
524 750 227 2.10E-222 –
MobiDBLite
mobidb-lite
530 639 110 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v2938490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2938490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.