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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2994520 |
| Transcript ID | Lj3g3v2994520.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Transmembrane 9 superfamily member [Medicago truncatula] gi|357471659|ref|XP_003606114.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 222 | 222 | 7.90E-145 | ||
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 1 | 222 | 222 | 7.90E-145 | – | |
| Pfam | 2 | 178 | 177 | 1.20E-48 | ||
| Phobius | 4 | 11 | 8 | – | – | |
| TMHMM | 5 | 27 | 23 | – | – | |
| Phobius | 12 | 19 | 8 | – | – | |
| Phobius | 20 | 28 | 9 | – | – | |
| Phobius | 29 | 54 | 26 | – | – | |
| TMHMM | 32 | 54 | 23 | – | – | |
| Phobius | 55 | 74 | 20 | – | – | |
| TMHMM | 75 | 97 | 23 | – | – | |
| Phobius | 75 | 97 | 23 | – | – | |
| Phobius | 98 | 116 | 19 | – | – | |
| Phobius | 117 | 136 | 20 | – | – | |
| TMHMM | 117 | 139 | 23 | – | – | |
| Phobius | 137 | 147 | 11 | – | – | |
| Phobius | 148 | 172 | 25 | – | – | |
| TMHMM | 148 | 170 | 23 | – | – | |
| Phobius | 173 | 183 | 11 | – | – | |
| Phobius | 184 | 212 | 29 | – | – | |
| TMHMM | 185 | 207 | 23 | – | – | |
| Phobius | 213 | 222 | 10 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v2994520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2994520.1, powered by CORGI.
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