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Lj3g3v3166230.1

Overview

Field Value
Gene ID Lj3g3v3166230
Transcript ID Lj3g3v3166230.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
1 181 181 0.0045 –
Gene3D
G3DSA:3.40.50.300
8 213 206 2.30E-74
IPR027417
PANTHER
PTHR24073:SF584
8 214 207 3.40E-160 –
PANTHER
PTHR24073
8 214 207 3.40E-160 –
ProSiteProfiles
PS51419
11 213 203 37.522 –
SUPERFAMILY
SSF52540
11 182 172 3.12E-61
IPR027417
CDD
cd01867
13 180 168 1.16E-116 –
TIGRFAM
TIGR00231
14 170 157 5.10E-30
IPR005225
SMART
SM00175
16 180 165 8.00E-102 –
PRINTS
PR00449
16 37 22 8.00E-46 –
SMART
SM00173
17 180 164 2.20E-33 –
Pfam
PF00071
17 178 162 1.70E-64
IPR001806
SMART
SM00174
18 180 163 6.10E-13 –
SMART
SM00176
21 214 194 3.70E-06 –
PRINTS
PR00449
39 55 17 8.00E-46 –
PRINTS
PR00449
57 79 23 8.00E-46 –
PRINTS
PR00449
119 132 14 8.00E-46 –
PRINTS
PR00449
155 177 23 8.00E-46 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v3166230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3166230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.