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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3200920 |
| Transcript ID | Lj3g3v3200920.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: expansin-A4-like [Glycine max] gi|356539004|ref|XP_003537990.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 23 | 23 | – | – | |
| PANTHER | 1 | 260 | 260 | 3.70E-212 | – | |
| PANTHER | 1 | 260 | 260 | 3.70E-212 | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| Phobius | 7 | 18 | 12 | – | – | |
| Phobius | 19 | 23 | 5 | – | – | |
| Gene3D | 19 | 160 | 142 | 1.50E-50 | ||
| Phobius | 24 | 260 | 237 | – | – | |
| PRINTS | 33 | 48 | 16 | 6.70E-50 | ||
| SUPERFAMILY | 33 | 184 | 152 | 3.42E-52 | ||
| PRINTS | 51 | 69 | 19 | 6.70E-50 | ||
| ProSiteProfiles | 52 | 166 | 115 | 29.388 | ||
| PRINTS | 64 | 78 | 15 | 3.80E-76 | ||
| SMART | 69 | 156 | 88 | 1.70E-52 | ||
| Pfam | 70 | 155 | 86 | 2.30E-19 | ||
| PRINTS | 73 | 91 | 19 | 6.70E-50 | ||
| PRINTS | 91 | 102 | 12 | 3.80E-76 | ||
| PRINTS | 105 | 115 | 11 | 3.80E-76 | ||
| PRINTS | 124 | 141 | 18 | 3.80E-76 | ||
| PRINTS | 141 | 154 | 14 | 3.80E-76 | ||
| PRINTS | 149 | 165 | 17 | 6.70E-50 | ||
| Gene3D | 161 | 256 | 96 | 1.50E-31 | ||
| SUPERFAMILY | 163 | 254 | 92 | 4.58E-33 | ||
| PRINTS | 165 | 177 | 13 | 3.80E-76 | ||
| Pfam | 167 | 244 | 78 | 2.10E-24 | ||
| ProSiteProfiles | 176 | 255 | 80 | 20.51 | ||
| PRINTS | 177 | 198 | 22 | 3.80E-76 | ||
| PRINTS | 203 | 217 | 15 | 6.70E-50 | ||
| PRINTS | 212 | 233 | 22 | 3.80E-76 | ||
| PRINTS | 241 | 257 | 17 | 3.80E-76 | ||
| PRINTS | 241 | 255 | 15 | 6.70E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of Lj3g3v3200920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3200920.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.