Transcript — View — Lotus Base

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Lj3g3v3225370.1

Overview

Field	Value
Gene ID	Lj3g3v3225370
Transcript ID	Lj3g3v3225370.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max] gi\|356523091\|ref\|XP_003530175.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	1956	1956	–	–
PANTHER	PTHR13162 View details on PTHR13162 Search for proteins/transripts with this domain View external data on PTHR13162	15	848	834	0	–
PANTHER	PTHR13162:SF8 View details on PTHR13162:SF8 Search for proteins/transripts with this domain View external data on PTHR13162:SF8	15	848	834	0	–
Pfam	PF16418 View details on PF16418 Search for proteins/transripts with this domain View external data on PF16418	486	632	147	1.50E-30	IPR032194 Show description in modal box View details on IPR032194 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF16417 View details on PF16417 Search for proteins/transripts with this domain View external data on PF16417	659	827	169	3.10E-64	IPR032193 Show description in modal box View details on IPR032193 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR13162 View details on PTHR13162 Search for proteins/transripts with this domain View external data on PTHR13162	876	1523	648	0	–
PANTHER	PTHR13162:SF8 View details on PTHR13162:SF8 Search for proteins/transripts with this domain View external data on PTHR13162:SF8	876	1523	648	0	–
Pfam	PF16415 View details on PF16415 Search for proteins/transripts with this domain View external data on PF16415	972	1192	221	1.30E-92	IPR032191 Show description in modal box View details on IPR032191 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12842 View details on PF12842 Search for proteins/transripts with this domain View external data on PF12842	1314	1455	142	2.50E-52	IPR024557 Show description in modal box View details on IPR024557 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1507	1548	42	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1587	1630	44	–	–
PANTHER	PTHR13162:SF8 View details on PTHR13162:SF8 Search for proteins/transripts with this domain View external data on PTHR13162:SF8	1604	2401	798	0	–
PANTHER	PTHR13162 View details on PTHR13162 Search for proteins/transripts with this domain View external data on PTHR13162	1604	2401	798	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1836	1871	36	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	1957	1976	20	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1977	2404	428	–	–
Pfam	PF04054 View details on PF04054 Search for proteins/transripts with this domain View external data on PF04054	2021	2384	364	7.80E-150	IPR007196 Show description in modal box View details on IPR007196 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj3g3v3225370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3225370.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.