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IPR024557 is a CCR4-NOT transcription complex subunit 1, domain 4.
<p>The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1 to Not5), Caf1, Caf40, Caf130 and Ccr4 [[cite:PUB00044101]]. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress [[cite:PUB00044102]]. Caf1 and Ccr4, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1, a putative RNA helicase thought to be a component of the decapping complex [[cite:PUB00010586]]. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase [[cite:PUB00044103]].</p> <p>This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max] gi|356523091|ref|XP_003530175.1| | 10 | ||
| – | PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max] gi|356523091|ref|XP_003530175.1| | 16 | ||
| – | CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|I1KJP7|I1KJP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 | 23 | ||
| – | CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|I1KJP7|I1KJP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 | 23 | ||
| – | CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0B2PP65|A0A0B2PP65_GLYSO CCR4-NOT transcription complex subunit 1; Found in the gene: LotjaGi3g1v0050800 | 23 | ||
| – | CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0B2PP65|A0A0B2PP65_GLYSO CCR4-NOT transcription complex subunit 1; Found in the gene: LotjaGi3g1v0050800 | 23 | ||
| – | CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0R0J669|A0A0R0J669_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 | 23 | ||
| – | CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0R0J669|A0A0R0J669_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 | 23 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 12.50 |