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Lj3g3v3242100.1

Overview

Field Value
Gene ID Lj3g3v3242100
Transcript ID Lj3g3v3242100.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cytochrome c-type biogenesis protein CcmE-like [Glycine max] gi|356544549|ref|XP_003540712.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34128
1 246 246 4.90E-145 –
Phobius
CYTOPLASMIC_DOMAIN
1 73 73 – –
PANTHER
PTHR34128:SF2
1 246 246 4.90E-145 –
Hamap
MF_01959
67 229 163 25.026
IPR004329
Pfam
PF03100
70 219 150 2.10E-43
IPR004329
TMHMM
TMhelix
74 96 23 – –
Phobius
TRANSMEMBRANE
74 95 22 – –
Gene3D
G3DSA:2.40.50.140
91 213 123 9.00E-31 –
SUPERFAMILY
SSF82093
95 224 130 5.36E-28
IPR004329
Phobius
NON_CYTOPLASMIC_DOMAIN
96 246 151 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0017003
Biological process Protein-heme linkage The covalent linkage of heme and a protein.
Subterm of
GO:0017004
Biological process Cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v3242100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3242100.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.