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IPR004329

Source: InterPro

Description

IPR004329 is a CcmE/CycJ protein.

<p>CcmE is the product of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in many prokaryotes [[cite:PUB00088177], [cite:PUB00088178]] and plant mitochondria [[cite:PUB00088174]]. In E. coli, expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor [[cite:PUB00002274]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0017003
Biological process Protein-heme linkage The covalent linkage of heme and a protein.
Subterm of
GO:0017004
Biological process Cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of

Associated Lotus transcripts 3

Transcript Name Description Predicted domains Domain count
Lj3g3v3242100.1
– PREDICTED: cytochrome c-type biogenesis protein CcmE-like [Glycine max] gi|356544549|ref|XP_003540712.1|
Domains
11
LotjaGi3g1v0494200.1
– Cytochrome C-type biogenesis protein CcmE; TAIR: AT3G51790.1 transmembrane protein G1P-related 1; Swiss-Prot: sp|Q2RYF4|CCME_RHORT Cytochrome c-type biogenesis protein CcmE; TrEMBL-Plants: tr|A0A1J7G785|A0A1J7G785_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0494200
Domains
12
LotjaGi3g1v0494200.2
– Cytochrome C-type biogenesis protein CcmE; TAIR: AT3G51790.1 transmembrane protein G1P-related 1; Swiss-Prot: sp|Q2RYF4|CCME_RHORT Cytochrome c-type biogenesis protein CcmE; TrEMBL-Plants: tr|I1LQI6|I1LQI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0494200
Domains
12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 33.33