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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3338200 |
| Transcript ID | Lj3g3v3338200.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508706676|gb|EOX98572.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 89 | 75 | 0 | – | |
| PANTHER | 15 | 89 | 75 | 0 | – | |
| ProSiteProfiles | 27 | 61 | 35 | 9.142 | ||
| TIGRFAM | 29 | 56 | 28 | 0.0011 | ||
| Pfam | 29 | 57 | 29 | 8.30E-05 | ||
| Gene3D | 31 | 89 | 59 | 1.40E-09 | ||
| Pfam | 60 | 83 | 24 | 0.13 | ||
| ProSiteProfiles | 89 | 120 | 32 | 8.232 | ||
| PANTHER | 123 | 190 | 68 | 0 | – | |
| PANTHER | 123 | 190 | 68 | 0 | – | |
| ProSiteProfiles | 162 | 192 | 31 | 6.149 | ||
| Pfam | 166 | 186 | 21 | 0.052 | ||
| ProSiteProfiles | 194 | 224 | 31 | 7.662 | ||
| Pfam | 197 | 218 | 22 | 0.0027 | ||
| Gene3D | 222 | 273 | 52 | 1.40E-09 | ||
| PANTHER | 223 | 640 | 418 | 0 | – | |
| PANTHER | 223 | 640 | 418 | 0 | – | |
| Pfam | 226 | 272 | 47 | 8.20E-12 | ||
| ProSiteProfiles | 226 | 260 | 35 | 12.244 | ||
| TIGRFAM | 228 | 261 | 34 | 1.90E-08 | ||
| ProSiteProfiles | 296 | 326 | 31 | 5.251 | ||
| ProSiteProfiles | 327 | 361 | 35 | 8.67 | ||
| Pfam | 332 | 358 | 27 | 0.0039 | ||
| TIGRFAM | 332 | 361 | 30 | 0.0013 | ||
| Pfam | 360 | 385 | 26 | 0.53 | ||
| ProSiteProfiles | 429 | 459 | 31 | 5.941 | ||
| Gene3D | 432 | 505 | 74 | 1.40E-09 | ||
| ProSiteProfiles | 462 | 496 | 35 | 11.751 | ||
| Pfam | 462 | 508 | 47 | 4.30E-11 | ||
| TIGRFAM | 465 | 497 | 33 | 7.50E-06 | ||
| ProSiteProfiles | 497 | 527 | 31 | 7.837 | ||
| ProSiteProfiles | 533 | 563 | 31 | 6.599 | ||
| Pfam | 536 | 559 | 24 | 0.77 | ||
| Gene3D | 541 | 618 | 78 | 1.40E-09 | ||
| Coils | 578 | 598 | 21 | – | – | |
| ProSiteProfiles | 599 | 633 | 35 | 6.445 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3338200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3338200.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.