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Lj3g3v3386580.1

Overview

Field Value
Gene ID Lj3g3v3386580
Transcript ID Lj3g3v3386580.1
Lotus japonicus genome version MG20 v3.0
Description GATA transcription factor [Medicago truncatula] gi|357473525|ref|XP_003607047.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF016992
13 302 290 5.60E-81
IPR016679
PANTHER
PTHR10071:SF183
16 289 274 1.60E-119 –
PANTHER
PTHR10071
16 289 274 1.60E-119 –
MobiDBLite
mobidb-lite
51 93 43 – –
MobiDBLite
mobidb-lite
140 164 25 – –
MobiDBLite
mobidb-lite
185 220 36 – –
SMART
SM00401
214 268 55 5.50E-14
IPR000679
ProSiteProfiles
PS50114
214 250 37 11.068
IPR000679
SUPERFAMILY
SSF57716
217 277 61 6.18E-14 –
Gene3D
G3DSA:3.30.50.10
218 251 34 1.50E-14
IPR013088
CDD
cd00202
219 276 58 3.52E-15 –
ProSitePatterns
PS00344
220 245 26 –
IPR000679
Pfam
PF00320
220 253 34 6.80E-17
IPR000679
MobiDBLite
mobidb-lite
284 303 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0045893
Biological process Positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Positively regulates

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v3386580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3386580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.