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Lj3g3v3386650.2

Overview

Field Value
Gene ID Lj3g3v3386650
Transcript ID Lj3g3v3386650.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Cicer arietinum] gi|502149384|ref|XP_004507506.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31576
1 53 53 3.60E-81 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 377 377 – –
PANTHER
PTHR31576:SF2
1 53 53 3.60E-81
IPR033599
PANTHER
PTHR31576
120 407 288 3.60E-81 –
PANTHER
PTHR31576:SF2
120 407 288 3.60E-81
IPR033599
Phobius
TRANSMEMBRANE
378 396 19 – –
Phobius
CYTOPLASMIC_DOMAIN
397 482 86 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001164
Molecular function RNA polymerase I CORE element sequence-specific DNA binding Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery. This site is often referred to as the CORE element. In mammalian cells, the CORE element functions in conjunction with the Upstream Control Element (UCE), while in fungi, protozoa, and plants, the CORE element functions without a UCE.
Subterm of
GO:0001188
Biological process RNA polymerase I preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase I promoter.
Subterm of
Part of
GO:0006360
Biological process Transcription by RNA polymerase I The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
Subterm of
GO:0070860
Cellular component RNA polymerase I core factor complex A RNA polymerase I-specific transcription factor complex that is required for the transcription of rDNA by RNA polymerase I. In yeast the complex consists of Rrn6p, Rrn7p, and Rrn11p.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v3386650.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3386650.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.