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Lj3g3v3500080.1

Overview

Field Value
Gene ID Lj3g3v3500080
Transcript ID Lj3g3v3500080.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
32 73 42 – –
MobiDBLite
mobidb-lite
187 257 71 – –
MobiDBLite
mobidb-lite
308 430 123 – –
TIGRFAM
TIGR00993
425 1172 748 0
IPR005690
MobiDBLite
mobidb-lite
446 472 27 – –
PANTHER
PTHR10903
465 1180 716 0 –
PANTHER
PTHR10903:SF47
465 1180 716 0 –
CDD
cd01853
521 766 246 1.21E-134 –
Gene3D
G3DSA:3.40.50.300
524 768 245 1.30E-70
IPR027417
SUPERFAMILY
SSF52540
542 683 142 2.28E-18
IPR027417
ProSiteProfiles
PS51720
546 775 230 66.889
IPR006703
Pfam
PF04548
549 707 159 3.70E-30
IPR006703
MobiDBLite
mobidb-lite
803 835 33 – –
Coils
Coil
866 889 24 – –
MobiDBLite
mobidb-lite
872 908 37 – –
Pfam
PF11886
907 1170 264 6.10E-124
IPR024283

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0016817
Molecular function Hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj3g3v3500080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3500080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.