Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006703
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.467s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4048440.1
n.a. PREDICTED: translocase of chloroplast 34-like [Glycine max] gi|356571841|ref|XP_003554080.1| chr1 47851318 47855215 +
3 domain predictions
1 GO term
Lj2g3v1987510.1
n.a. PREDICTED: protein AIG1-like [Glycine max] gi|356526433|ref|XP_003531822.1| chr2 29428636 29432074 +
3 domain predictions
1 GO term
Lj3g3v3500070.1
n.a. PREDICTED: translocase of chloroplast 132, chloroplastic-like [Glycine max] gi|356541023|ref|XP_003538983.1| chr3 42505368 42509862 +
3 domain predictions
1 GO term
Lj3g3v3500080.1
n.a. n.a. chr3 42505978 42510589 -
3 domain predictions
1 GO term
Lj3g3v3500080.2
n.a. n.a. chr3 42505978 42510589 -
3 domain predictions
1 GO term
Lj4g3v1920950.1
n.a. PREDICTED: translocase of chloroplast 90, chloroplastic-like [Glycine max] gi|356546132|ref|XP_003541485.1| chr4 27073344 27079591 -
3 domain predictions
1 GO term
Lj4g3v2665250.1
n.a. chloroplast protein import component Toc159 [Pisum sativum] gi|8489806|gb|AAF75761.1|AF262939_1 chr4 36039317 36043594 +
3 domain predictions
1 GO term
LotjaGi1g1v0653800.1
n.a. Translocase of chloroplast; TAIR: AT5G05000.1 translocon at the outer envelope membrane of chloroplasts 34; Swiss-Prot: sp|Q41009|TOC34_PEA Translocase of chloroplast 34; TrEMBL-Plants: tr|K7MY05|K7MY05_SOYBN Translocase of chloroplast; Found in the gene: LotjaGi1g1v0653800 LjG1.1_chr1 121325931 121330075 +
3 domain predictions
1 GO term
LotjaGi1g1v0653800.2
n.a. Translocase of chloroplast; TAIR: AT5G05000.1 translocon at the outer envelope membrane of chloroplasts 34; Swiss-Prot: sp|Q41009|TOC34_PEA Translocase of chloroplast 34; TrEMBL-Plants: tr|K7MY05|K7MY05_SOYBN Translocase of chloroplast; Found in the gene: LotjaGi1g1v0653800 LjG1.1_chr1 121325980 121329835 +
3 domain predictions
1 GO term
LotjaGi1g1v0653800.3
n.a. Translocase of chloroplast; TAIR: AT5G05000.1 translocon at the outer envelope membrane of chloroplasts 34; Swiss-Prot: sp|Q41009|TOC34_PEA Translocase of chloroplast 34; TrEMBL-Plants: tr|K7MY05|K7MY05_SOYBN Translocase of chloroplast; Found in the gene: LotjaGi1g1v0653800 LjG1.1_chr1 121326265 121329385 +
3 domain predictions
1 GO term
LotjaGi2g1v0416800.1
n.a. Protein AIG1; TAIR: AT1G33970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|F4HT21|IAN9_ARATH Immune-associated nucleotide-binding protein 9; TrEMBL-Plants: tr|I3SDB7|I3SDB7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0416800 LjG1.1_chr2 91465077 91469551 +
3 domain predictions
1 GO term
LotjaGi2g1v0417000.1
n.a. tRNA modification GTPase MnmE; TAIR: AT1G33970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|F4HT21|IAN9_ARATH Immune-associated nucleotide-binding protein 9; TrEMBL-Plants: tr|I3SDB7|I3SDB7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0417000 LjG1.1_chr2 91482393 91486339 +
3 domain predictions
1 GO term
LotjaGi3g1v0523700.1
n.a. Translocase of chloroplast; TAIR: AT2G16640.1 multimeric translocon complex in the outer envelope membrane 132; Swiss-Prot: sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic; TrEMBL-Plants: tr|I1LIY4|I1LIY4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0523700 LjG1.1_chr3 94085537 94091767 +
3 domain predictions
1 GO term
LotjaGi4g1v0278900.1
n.a. Translocase of chloroplast 90, chloroplastic; TAIR: AT5G20300.1 Avirulence induced gene (AIG1) family protein; Swiss-Prot: sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic; TrEMBL-Plants: tr|I1LZT2|I1LZT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278900 LjG1.1_chr4 64916884 64921585 -
3 domain predictions
1 GO term
LotjaGi4g1v0341400.1
n.a. tRNA modification GTPase MnmE; TAIR: AT4G02510.1 translocon at the outer envelope membrane of chloroplasts 159; Swiss-Prot: sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic; TrEMBL-Plants: tr|G7JLH6|G7JLH6_MEDTR 50S ribosome-binding GTPase; Found in the gene: LotjaGi4g1v0341400 LjG1.1_chr4 72120236 72123976 +
3 domain predictions
1 GO term
LotjaGi4g1v0385900.1
n.a. Translocase of chloroplast 159, chloroplastic; TAIR: AT4G02510.1 translocon at the outer envelope membrane of chloroplasts 159; Swiss-Prot: sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic; TrEMBL-Plants: tr|K7KQN4|K7KQN4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0385900 LjG1.1_chr4 76423386 76429329 +
3 domain predictions
1 GO term