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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3511350 |
| Transcript ID | Lj3g3v3511350.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: uracil-DNA glycosylase-like [Glycine max] gi|356544588|ref|XP_003540731.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 25 | 25 | – | – | |
| ProSiteProfiles | 1 | 24 | 24 | 5 | – | |
| PANTHER | 30 | 299 | 270 | 1.70E-201 | – | |
| PANTHER | 30 | 299 | 270 | 1.70E-201 | ||
| Gene3D | 76 | 299 | 224 | 4.60E-99 | ||
| SUPERFAMILY | 81 | 299 | 219 | 6.54E-91 | ||
| Hamap | 83 | 298 | 216 | 39.006 | ||
| TIGRFAM | 84 | 291 | 208 | 1.40E-80 | ||
| CDD | 97 | 297 | 201 | 1.67E-125 | ||
| SMART | 127 | 287 | 161 | 1.20E-37 | ||
| SMART | 127 | 287 | 161 | 1.20E-37 | – | |
| Pfam | 130 | 286 | 157 | 6.90E-22 | ||
| ProSitePatterns | 135 | 144 | 10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Uracil DNA N-glycosylase activity | Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Base-excision repair | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. | ||
| Molecular function | Hydrolase activity, hydrolyzing N-glycosyl compounds | Catalysis of the hydrolysis of any N-glycosyl bond. |
Expression pattern of Lj3g3v3511350.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3511350.2, powered by CORGI.
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