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Lj3g3v3558220.1

Overview

Field Value
Gene ID Lj3g3v3558220
Transcript ID Lj3g3v3558220.1
Lotus japonicus genome version MG20 v3.0
Description Pyridoxal phosphate-dependent transferases superfamily protein [Theobroma cacao] gi|508701290|gb|EOX93186.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11986:SF90
1 228 228 1.70E-151 –
PANTHER
PTHR11986
1 228 228 1.70E-151
IPR005814
Gene3D
G3DSA:3.40.640.10
1 103 103 1.40E-39
IPR015421
SUPERFAMILY
SSF53383
1 220 220 2.07E-61
IPR015424
Pfam
PF00202
2 219 218 4.10E-48
IPR005814
ProSitePatterns
PS00600
28 65 38 –
IPR005814
Gene3D
G3DSA:3.90.1150.10
104 222 119 5.40E-35
IPR015422
Coils
Coil
213 235 23 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v3558220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3558220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.