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Lj3g3v3639490.1

Overview

Field Value
Gene ID Lj3g3v3639490
Transcript ID Lj3g3v3639490.1
Lotus japonicus genome version MG20 v3.0
Description transcription factor MYB101 [Lotus japonicus] gi|30024598|dbj|BAC75671.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF671
1 349 349 1.40E-165 –
PANTHER
PTHR10641
1 349 349 1.40E-165 –
ProSiteProfiles
PS51294
10 62 53 18.225
IPR017930
SUPERFAMILY
SSF46689
12 109 98 8.80E-33
IPR009057
SMART
SM00717
14 64 51 1.60E-15
IPR001005
Pfam
PF00249
15 62 48 2.00E-17
IPR001005
Gene3D
G3DSA:1.10.10.60
16 69 54 1.00E-25
IPR009057
CDD
cd00167
17 62 46 4.99E-12 –
ProSiteProfiles
PS51294
63 117 55 28.127
IPR017930
SMART
SM00717
67 115 49 1.90E-17
IPR001005
Pfam
PF00249
68 113 46 4.30E-17
IPR001005
Gene3D
G3DSA:1.10.10.60
70 117 48 2.40E-28
IPR009057
CDD
cd00167
70 113 44 3.75E-13 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj3g3v3639490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3639490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.