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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3650370 |
| Transcript ID | Lj3g3v3650370.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Calcium-transporting ATPase 4, plasma membrane-type [Medicago truncatula] gi|357471123|ref|XP_003605846.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 592 | 592 | 0 | – | |
| PANTHER | 1 | 592 | 592 | 0 | – | |
| Phobius | 1 | 171 | 171 | – | – | |
| Pfam | 5 | 49 | 45 | 9.40E-19 | ||
| TIGRFAM | 109 | 591 | 483 | 8.50E-166 | ||
| SMART | 115 | 189 | 75 | 9.20E-13 | ||
| Pfam | 116 | 184 | 69 | 3.10E-19 | ||
| SUPERFAMILY | 116 | 235 | 120 | 1.57E-56 | – | |
| Gene3D | 126 | 169 | 44 | 8.20E-36 | ||
| Phobius | 172 | 191 | 20 | – | – | |
| TMHMM | 172 | 191 | 20 | – | – | |
| Phobius | 192 | 196 | 5 | – | – | |
| Phobius | 197 | 217 | 21 | – | – | |
| TMHMM | 201 | 218 | 18 | – | – | |
| PRINTS | 202 | 222 | 21 | 2.50E-08 | – | |
| Pfam | 204 | 443 | 240 | 3.10E-43 | ||
| Phobius | 218 | 353 | 136 | – | – | |
| Gene3D | 226 | 334 | 109 | 8.20E-36 | ||
| SUPERFAMILY | 237 | 332 | 96 | 5.62E-23 | – | |
| PRINTS | 283 | 297 | 15 | 1.90E-06 | – | |
| SUPERFAMILY | 335 | 446 | 112 | 1.57E-56 | – | |
| Phobius | 354 | 376 | 23 | – | – | |
| TMHMM | 354 | 376 | 23 | – | – | |
| Phobius | 377 | 395 | 19 | – | – | |
| TIGRFAM | 393 | 476 | 84 | 6.10E-19 | ||
| Phobius | 396 | 425 | 30 | – | – | |
| TMHMM | 402 | 424 | 23 | – | – | |
| Phobius | 426 | 592 | 167 | – | – | |
| Gene3D | 442 | 592 | 151 | 3.50E-34 | ||
| PRINTS | 445 | 466 | 22 | 2.50E-08 | – | |
| PRINTS | 452 | 466 | 15 | 1.90E-06 | – | |
| ProSitePatterns | 454 | 460 | 7 | – | ||
| SUPERFAMILY | 458 | 592 | 135 | 5.45E-27 | ||
| Pfam | 515 | 592 | 78 | 2.20E-17 | – | |
| PRINTS | 578 | 592 | 15 | 2.50E-08 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj3g3v3650370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3650370.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.