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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3751950 |
| Transcript ID | Lj3g3v3751950.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Glycine max] gi|356529889|ref|XP_003533519.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | – | – | |
| PANTHER | 27 | 520 | 494 | 0 | – | |
| PANTHER | 27 | 520 | 494 | 0 | – | |
| ProSiteProfiles | 119 | 149 | 31 | 7.454 | ||
| Gene3D | 119 | 283 | 165 | 2.30E-09 | ||
| Pfam | 126 | 149 | 24 | 0.034 | ||
| ProSiteProfiles | 152 | 186 | 35 | 12.584 | ||
| Pfam | 155 | 198 | 44 | 6.30E-09 | ||
| TIGRFAM | 156 | 187 | 32 | 5.00E-09 | ||
| ProSiteProfiles | 187 | 221 | 35 | 6.697 | ||
| ProSiteProfiles | 222 | 252 | 31 | 7.815 | ||
| Pfam | 227 | 252 | 26 | 0.14 | ||
| ProSiteProfiles | 253 | 287 | 35 | 11.553 | ||
| Pfam | 253 | 299 | 47 | 4.90E-09 | ||
| TIGRFAM | 255 | 288 | 34 | 1.10E-07 | ||
| Gene3D | 317 | 392 | 76 | 2.30E-09 | ||
| ProSiteProfiles | 320 | 354 | 35 | 9.712 | ||
| TIGRFAM | 325 | 353 | 29 | 0.0026 | ||
| Pfam | 351 | 395 | 45 | 7.70E-12 | ||
| TIGRFAM | 353 | 383 | 31 | 4.00E-05 | ||
| ProSiteProfiles | 364 | 382 | 19 | 5.437 | ||
| ProSiteProfiles | 383 | 413 | 31 | 7.618 | ||
| ProSiteProfiles | 419 | 454 | 36 | 5.546 | ||
| Pfam | 425 | 442 | 18 | 0.22 | ||
| Gene3D | 485 | 506 | 22 | 2.30E-09 | ||
| ProSiteProfiles | 487 | 521 | 35 | 7.125 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3751950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3751950.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.