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Lj4g3v0153680.1

Overview

Field Value
Gene ID Lj4g3v0153680
Transcript ID Lj4g3v0153680.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Cicer arietinum] gi|502149858|ref|XP_004507689.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF02676
1 43 43 8.70E-08
IPR003827
Gene3D
G3DSA:3.30.1960.10
1 41 41 1.80E-07
IPR003827
SUPERFAMILY
SSF111278
1 43 43 1.44E-06
IPR003827
Gene3D
G3DSA:2.120.10.80
127 390 264 1.40E-55
IPR015915
SUPERFAMILY
SSF117281
128 390 263 9.81E-55 –
Pfam
PF13418
170 212 43 5.60E-11 –
SMART
SM00612
182 232 51 1.4
IPR006652
Pfam
PF01344
221 263 43 1.60E-08
IPR006652
SMART
SM00612
233 280 48 0.36
IPR006652
Pfam
PF13418
271 311 41 5.80E-09 –
SMART
SM00612
283 332 50 0.19
IPR006652
SUPERFAMILY
SSF53335
604 872 269 1.66E-55
IPR029063
PANTHER
PTHR23245
609 877 269 5.40E-130 –
PANTHER
PTHR23245:SF31
609 877 269 5.40E-130 –
ProSiteProfiles
PS51684
615 874 260 65.493
IPR030382
Pfam
PF02475
617 812 196 7.10E-33
IPR030382
Gene3D
G3DSA:3.40.50.150
678 873 196 1.50E-57
IPR029063
CDD
cd02440
719 774 56 3.32E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj4g3v0153680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0153680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.