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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0200180 |
| Transcript ID | Lj4g3v0200180.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: polygalacturonase At1g48100-like [Glycine max] gi|356524988|ref|XP_003531109.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 63 | 63 | 3.50E-265 | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| PANTHER | 1 | 63 | 63 | 3.50E-265 | – | |
| Phobius | 8 | 19 | 12 | – | – | |
| Phobius | 20 | 26 | 7 | – | – | |
| Phobius | 27 | 399 | 373 | – | – | |
| MobiDBLite | 35 | 84 | 50 | – | – | |
| Gene3D | 76 | 399 | 324 | 1.70E-110 | ||
| SUPERFAMILY | 81 | 399 | 319 | 1.02E-102 | ||
| PANTHER | 82 | 399 | 318 | 3.50E-265 | – | |
| PANTHER | 82 | 399 | 318 | 3.50E-265 | – | |
| Pfam | 125 | 399 | 275 | 6.30E-75 | ||
| SMART | 245 | 271 | 27 | 480 | ||
| SMART | 272 | 293 | 22 | 1900 | ||
| SMART | 295 | 315 | 21 | 8200 | ||
| ProSitePatterns | 302 | 315 | 14 | – | ||
| SMART | 325 | 346 | 22 | 73 | ||
| SMART | 354 | 375 | 22 | 510 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj4g3v0200180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0200180.1, powered by CORGI.
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