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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0288380 |
| Transcript ID | Lj4g3v0288380.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Cicer arietinum] gi|502141964|ref|XP_004504725.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 397 | 397 | 0 | – | |
| PANTHER | 1 | 397 | 397 | 0 | – | |
| ProSiteProfiles | 1 | 21 | 21 | 5.875 | ||
| Pfam | 22 | 68 | 47 | 1.10E-10 | ||
| ProSiteProfiles | 22 | 56 | 35 | 10.687 | ||
| ProSiteProfiles | 89 | 119 | 31 | 8.429 | ||
| Gene3D | 90 | 219 | 130 | 5.10E-08 | ||
| TIGRFAM | 94 | 117 | 24 | 3.90E-04 | ||
| Pfam | 94 | 117 | 24 | 2.90E-05 | ||
| Pfam | 120 | 166 | 47 | 5.10E-09 | ||
| ProSiteProfiles | 120 | 154 | 35 | 11.279 | ||
| TIGRFAM | 122 | 155 | 34 | 1.80E-07 | ||
| ProSiteProfiles | 188 | 218 | 31 | 9.504 | ||
| TIGRFAM | 191 | 219 | 29 | 5.80E-05 | ||
| Pfam | 218 | 258 | 41 | 1.70E-07 | ||
| ProSiteProfiles | 219 | 253 | 35 | 11.422 | ||
| TIGRFAM | 221 | 254 | 34 | 7.30E-06 | ||
| ProSiteProfiles | 254 | 284 | 31 | 5.952 | ||
| ProSiteProfiles | 290 | 320 | 31 | 7.245 | ||
| Pfam | 293 | 318 | 26 | 0.0057 | ||
| TIGRFAM | 294 | 318 | 25 | 9.20E-04 | ||
| Gene3D | 320 | 375 | 56 | 5.10E-08 | ||
| ProSiteProfiles | 322 | 352 | 31 | 6.303 | ||
| ProSiteProfiles | 356 | 390 | 35 | 7.739 | ||
| Pfam | 392 | 516 | 125 | 2.00E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v0288380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0288380.1, powered by CORGI.
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