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Lj4g3v0310490.1

Overview

Field Value
Gene ID Lj4g3v0310490
Transcript ID Lj4g3v0310490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Cicer arietinum] gi|502141970|ref|XP_004504728.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 82 82 – –
PANTHER
PTHR10315:SF43
15 324 310 1.90E-99 –
PANTHER
PTHR10315
15 324 310 1.90E-99
IPR004162
Gene3D
G3DSA:3.30.40.10
87 166 80 6.70E-10
IPR013083
SUPERFAMILY
SSF57850
100 143 44 7.07E-06 –
CDD
cd00162
100 140 41 0.0013402 –
ProSiteProfiles
PS50089
101 136 36 8.86
IPR001841
Pfam
PF03145
144 292 149 6.10E-16
IPR018121
SUPERFAMILY
SSF49599
154 324 171 3.73E-22
IPR008974
ProSiteProfiles
PS51081
154 212 59 12.044
IPR013010
Gene3D
G3DSA:3.90.890.10
167 207 41 1.30E-14
IPR013323

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0007275
Biological process Multicellular organism development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v0310490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0310490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.