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Lj4g3v0385830.1

Overview

Field	Value
Gene ID	Lj4g3v0385830
Transcript ID	Lj4g3v0385830.1
Lotus japonicus genome version	MG20 v3.0
Description	Magnesium-dependent phosphatase [Medicago truncatula] gi\|357476201\|ref\|XP_003608386.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR17901:SF14 View details on PTHR17901:SF14 Search for proteins/transripts with this domain View external data on PTHR17901:SF14	1	171	171	4.10E-84	–
PANTHER	PTHR17901 View details on PTHR17901 Search for proteins/transripts with this domain View external data on PTHR17901	1	171	171	4.10E-84	IPR024734 Show description in modal box View details on IPR024734 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12689 View details on PF12689 Search for proteins/transripts with this domain View external data on PF12689	21	41	21	1.90E-06	IPR010036 Show description in modal box View details on IPR010036 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1000 View details on G3DSA:3.40.50.1000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1000	21	162	142	8.00E-43	IPR023214 Show description in modal box View details on IPR023214 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF56784 View details on SSF56784 Search for proteins/transripts with this domain View external data on SSF56784	23	156	134	9.95E-23	IPR023214 Show description in modal box View details on IPR023214 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd01427 View details on cd01427 Search for proteins/transripts with this domain View external data on cd01427	24	145	122	2.29E-07	–
TIGRFAM	TIGR01681 View details on TIGR01681 Search for proteins/transripts with this domain View external data on TIGR01681	24	138	115	5.10E-13	IPR010033 Show description in modal box View details on IPR010033 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12689 View details on PF12689 Search for proteins/transripts with this domain View external data on PF12689	48	162	115	3.30E-27	IPR010036 Show description in modal box View details on IPR010036 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016791 View details of GO:0016791 AmiGO InterPro QuickGO	Molecular function	Phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.	Subterm of View details of GO:0042578

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj4g3v0385830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0385830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.