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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0409540 |
| Transcript ID | Lj4g3v0409540.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein spinster homolog 1-like [Glycine max] gi|356519493|ref|XP_003528407.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 97 | 97 | – | – | |
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 12 | 261 | 250 | 3.00E-247 | – | |
| PANTHER | 12 | 261 | 250 | 3.00E-247 | – | |
| SUPERFAMILY | 22 | 242 | 221 | 4.58E-53 | ||
| Gene3D | 41 | 235 | 195 | 4.20E-25 | – | |
| ProSiteProfiles | 43 | 494 | 452 | 20.438 | ||
| Pfam | 84 | 446 | 363 | 4.50E-31 | ||
| CDD | 88 | 487 | 400 | 1.87E-21 | ||
| TMHMM | 97 | 116 | 20 | – | – | |
| Phobius | 98 | 117 | 20 | – | – | |
| Phobius | 118 | 128 | 11 | – | – | |
| TMHMM | 126 | 148 | 23 | – | – | |
| Phobius | 129 | 150 | 22 | – | – | |
| Phobius | 151 | 155 | 5 | – | – | |
| Phobius | 156 | 172 | 17 | – | – | |
| Phobius | 173 | 183 | 11 | – | – | |
| TMHMM | 184 | 206 | 23 | – | – | |
| Phobius | 184 | 202 | 19 | – | – | |
| Phobius | 203 | 213 | 11 | – | – | |
| TMHMM | 210 | 232 | 23 | – | – | |
| Phobius | 214 | 233 | 20 | – | – | |
| Phobius | 234 | 303 | 70 | – | – | |
| SUPERFAMILY | 290 | 487 | 198 | 4.58E-53 | ||
| PANTHER | 295 | 501 | 207 | 3.00E-247 | – | |
| PANTHER | 295 | 501 | 207 | 3.00E-247 | – | |
| Gene3D | 299 | 487 | 189 | 2.00E-10 | – | |
| Phobius | 304 | 326 | 23 | – | – | |
| TMHMM | 308 | 330 | 23 | – | – | |
| Phobius | 327 | 345 | 19 | – | – | |
| TMHMM | 345 | 366 | 22 | – | – | |
| Phobius | 346 | 367 | 22 | – | – | |
| Phobius | 368 | 378 | 11 | – | – | |
| TMHMM | 379 | 397 | 19 | – | – | |
| Phobius | 379 | 397 | 19 | – | – | |
| Phobius | 398 | 402 | 5 | – | – | |
| TMHMM | 402 | 424 | 23 | – | – | |
| Phobius | 403 | 426 | 24 | – | – | |
| Phobius | 427 | 432 | 6 | – | – | |
| Phobius | 433 | 449 | 17 | – | – | |
| Phobius | 450 | 468 | 19 | – | – | |
| Phobius | 469 | 491 | 23 | – | – | |
| TMHMM | 470 | 492 | 23 | – | – | |
| Phobius | 492 | 501 | 10 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v0409540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0409540.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.