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Lj4g3v0445340.1

Overview

Field	Value
Gene ID	Lj4g3v0445340
Transcript ID	Lj4g3v0445340.1
Lotus japonicus genome version	MG20 v3.0
Description	Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi\|357475961\|ref\|XP_003608266.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	26	75	50	–	–
SUPERFAMILY	SSF49354 View details on SSF49354 Search for proteins/transripts with this domain View external data on SSF49354	71	212	142	1.39E-32	IPR008962 Show description in modal box View details on IPR008962 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR10809:SF48 View details on PTHR10809:SF48 Search for proteins/transripts with this domain View external data on PTHR10809:SF48	77	269	193	1.60E-135	–
PANTHER	PTHR10809 View details on PTHR10809 Search for proteins/transripts with this domain View external data on PTHR10809	77	269	193	1.60E-135	IPR016763 Show description in modal box View details on IPR016763 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.60.40.360 View details on G3DSA:2.60.40.360 Search for proteins/transripts with this domain View external data on G3DSA:2.60.40.360	78	199	122	2.00E-33	IPR008962 Show description in modal box View details on IPR008962 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50202 View details on PS50202 Search for proteins/transripts with this domain View external data on PS50202	82	202	121	22.078	IPR000535 Show description in modal box View details on IPR000535 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00635 View details on PF00635 Search for proteins/transripts with this domain View external data on PF00635	83	192	110	2.10E-29	IPR000535 Show description in modal box View details on IPR000535 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005789 View details of GO:0005789 AmiGO InterPro QuickGO	Cellular component	Endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.	Subterm of View details of GO:0016020 View details of GO:0044425 View details of GO:0044432 Part of View details of GO:0042175 View details of GO:0098827

Genome browser

LORE1 insertions 26

Expression data

Expression pattern

Expression pattern of Lj4g3v0445340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0445340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.