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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0537650 |
| Transcript ID | Lj4g3v0537650.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] gi|356519676|ref|XP_003528496.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 36 | 66 | 31 | 5.81 | ||
| PANTHER | 41 | 135 | 95 | 0 | – | |
| PANTHER | 41 | 135 | 95 | 0 | – | |
| ProSiteProfiles | 67 | 101 | 35 | 10.172 | ||
| Pfam | 67 | 115 | 49 | 1.40E-08 | ||
| TIGRFAM | 70 | 102 | 33 | 2.00E-06 | ||
| ProSiteProfiles | 102 | 136 | 35 | 8.21 | ||
| PANTHER | 167 | 275 | 109 | 0 | – | |
| PANTHER | 167 | 275 | 109 | 0 | – | |
| ProSiteProfiles | 168 | 198 | 31 | 7.684 | ||
| Pfam | 170 | 198 | 29 | 5.90E-04 | ||
| Pfam | 199 | 247 | 49 | 5.40E-09 | ||
| ProSiteProfiles | 199 | 234 | 36 | 11.016 | ||
| TIGRFAM | 201 | 236 | 36 | 5.70E-04 | ||
| ProSiteProfiles | 235 | 269 | 35 | 5.963 | ||
| ProSiteProfiles | 270 | 304 | 35 | 5.842 | ||
| Gene3D | 278 | 492 | 215 | 1.90E-10 | ||
| SUPERFAMILY | 295 | 431 | 137 | 4.18E-06 | – | |
| Pfam | 307 | 328 | 22 | 0.71 | ||
| PANTHER | 308 | 675 | 368 | 0 | – | |
| PANTHER | 308 | 675 | 368 | 0 | – | |
| ProSiteProfiles | 333 | 367 | 35 | 10.315 | ||
| TIGRFAM | 335 | 360 | 26 | 4.50E-04 | ||
| Pfam | 335 | 360 | 26 | 2.20E-04 | ||
| Pfam | 367 | 391 | 25 | 1.70E-06 | ||
| TIGRFAM | 367 | 390 | 24 | 6.10E-05 | ||
| ProSiteProfiles | 369 | 394 | 26 | 6.369 | ||
| Pfam | 396 | 442 | 47 | 2.20E-13 | ||
| ProSiteProfiles | 396 | 430 | 35 | 11.071 | ||
| TIGRFAM | 398 | 426 | 29 | 2.60E-06 | ||
| ProSiteProfiles | 466 | 496 | 31 | 5.261 | ||
| Pfam | 496 | 544 | 49 | 1.20E-07 | ||
| ProSiteProfiles | 497 | 531 | 35 | 10.128 | ||
| TIGRFAM | 500 | 533 | 34 | 2.10E-04 | ||
| ProSiteProfiles | 532 | 562 | 31 | 7.629 | ||
| ProSiteProfiles | 568 | 598 | 31 | 7.761 | ||
| Pfam | 571 | 595 | 25 | 0.0064 | ||
| TIGRFAM | 572 | 595 | 24 | 0.0025 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0537650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0537650.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.