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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0793350 |
| Transcript ID | Lj4g3v0793350.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: metal transporter Nramp3-like [Glycine max] gi|356511925|ref|XP_003524672.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | – | – | |
| MobiDBLite | 1 | 22 | 22 | – | – | |
| PANTHER | 6 | 29 | 24 | 0 | – | |
| PANTHER | 6 | 29 | 24 | 0 | ||
| Hamap | 38 | 461 | 424 | 37.201 | ||
| PANTHER | 46 | 502 | 457 | 0 | ||
| PANTHER | 46 | 502 | 457 | 0 | – | |
| TIGRFAM | 51 | 429 | 379 | 1.40E-127 | ||
| Phobius | 53 | 68 | 16 | – | – | |
| Phobius | 69 | 87 | 19 | – | – | |
| Pfam | 74 | 435 | 362 | 1.80E-117 | ||
| TMHMM | 82 | 104 | 23 | – | – | |
| Phobius | 88 | 110 | 23 | – | – | |
| Phobius | 111 | 130 | 20 | – | – | |
| Phobius | 131 | 157 | 27 | – | – | |
| PRINTS | 132 | 158 | 27 | 1.40E-78 | ||
| Phobius | 158 | 162 | 5 | – | – | |
| TMHMM | 161 | 183 | 23 | – | – | |
| PRINTS | 162 | 181 | 20 | 1.40E-78 | ||
| Phobius | 163 | 182 | 20 | – | – | |
| Phobius | 183 | 188 | 6 | – | – | |
| PRINTS | 187 | 208 | 22 | 1.40E-78 | ||
| Phobius | 189 | 210 | 22 | – | – | |
| TMHMM | 190 | 212 | 23 | – | – | |
| Phobius | 211 | 235 | 25 | – | – | |
| TMHMM | 232 | 251 | 20 | – | – | |
| Phobius | 236 | 255 | 20 | – | – | |
| PRINTS | 236 | 259 | 24 | 1.40E-78 | ||
| Phobius | 256 | 275 | 20 | – | – | |
| TMHMM | 272 | 294 | 23 | – | – | |
| Phobius | 276 | 299 | 24 | – | – | |
| Phobius | 300 | 331 | 32 | – | – | |
| TMHMM | 331 | 353 | 23 | – | – | |
| Phobius | 332 | 353 | 22 | – | – | |
| PRINTS | 343 | 362 | 20 | 1.40E-78 | ||
| Phobius | 354 | 372 | 19 | – | – | |
| PRINTS | 371 | 388 | 18 | 1.40E-78 | ||
| Phobius | 373 | 390 | 18 | – | – | |
| TMHMM | 373 | 390 | 18 | – | – | |
| Phobius | 391 | 401 | 11 | – | – | |
| Phobius | 402 | 424 | 23 | – | – | |
| PRINTS | 405 | 424 | 20 | 1.40E-78 | ||
| TMHMM | 405 | 424 | 20 | – | – | |
| Phobius | 425 | 435 | 11 | – | – | |
| Phobius | 436 | 456 | 21 | – | – | |
| TMHMM | 436 | 458 | 23 | – | – | |
| Phobius | 457 | 467 | 11 | – | – | |
| Phobius | 468 | 490 | 23 | – | – | |
| TMHMM | 468 | 490 | 23 | – | – | |
| Phobius | 491 | 512 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of Lj4g3v0793350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0793350.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.