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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0880270 |
| Transcript ID | Lj4g3v0880270.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] gi|356543211|ref|XP_003540056.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | – | – | |
| PANTHER | 1 | 472 | 472 | 0 | ||
| PIRSF | 8 | 471 | 464 | 4.40E-99 | ||
| SUPERFAMILY | 10 | 466 | 457 | 2.75E-124 | ||
| Gene3D | 10 | 470 | 461 | 2.00E-169 | ||
| TIGRFAM | 31 | 467 | 437 | 2.30E-108 | ||
| TMHMM | 34 | 56 | 23 | – | – | |
| Phobius | 34 | 56 | 23 | – | – | |
| Pfam | 42 | 76 | 35 | 1.80E-18 | ||
| Phobius | 57 | 75 | 19 | – | – | |
| Phobius | 76 | 97 | 22 | – | – | |
| TMHMM | 76 | 98 | 23 | – | – | |
| Pfam | 77 | 459 | 383 | 6.40E-76 | ||
| ProSitePatterns | 77 | 96 | 20 | – | ||
| Phobius | 98 | 117 | 20 | – | – | |
| Phobius | 118 | 136 | 19 | – | – | |
| TMHMM | 119 | 141 | 23 | – | – | |
| Phobius | 137 | 147 | 11 | – | – | |
| TMHMM | 146 | 168 | 23 | – | – | |
| Phobius | 148 | 168 | 21 | – | – | |
| Phobius | 169 | 174 | 6 | – | – | |
| Phobius | 175 | 196 | 22 | – | – | |
| TMHMM | 175 | 196 | 22 | – | – | |
| Phobius | 197 | 247 | 51 | – | – | |
| TMHMM | 245 | 267 | 23 | – | – | |
| Phobius | 248 | 268 | 21 | – | – | |
| Phobius | 269 | 287 | 19 | – | – | |
| TMHMM | 287 | 309 | 23 | – | – | |
| Phobius | 288 | 307 | 20 | – | – | |
| Phobius | 308 | 362 | 55 | – | – | |
| Phobius | 363 | 382 | 20 | – | – | |
| TMHMM | 363 | 385 | 23 | – | – | |
| Phobius | 383 | 417 | 35 | – | – | |
| TMHMM | 415 | 437 | 23 | – | – | |
| Phobius | 418 | 436 | 19 | – | – | |
| Phobius | 437 | 441 | 5 | – | – | |
| TMHMM | 441 | 460 | 20 | – | – | |
| Phobius | 442 | 460 | 19 | – | – | |
| Phobius | 461 | 476 | 16 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of Lj4g3v0880270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0880270.1, powered by CORGI.
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