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Lj4g3v0911380.1

Overview

Field Value
Gene ID Lj4g3v0911380
Transcript ID Lj4g3v0911380.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: BEL1-like homeodomain protein 2-like [Glycine max] gi|356502201|ref|XP_003519909.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
57 83 27 – –
MobiDBLite
mobidb-lite
118 203 86 – –
MobiDBLite
mobidb-lite
221 243 23 – –
SMART
SM00574
369 501 133 2.10E-71
IPR006563
PANTHER
PTHR11850
369 792 424 4.80E-247 –
PANTHER
PTHR11850:SF103
369 792 424 4.80E-247 –
Pfam
PF07526
374 499 126 1.40E-48
IPR006563
MobiDBLite
mobidb-lite
405 435 31 – –
ProSiteProfiles
PS50071
550 613 64 12.487
IPR001356
SMART
SM00389
553 617 65 2.40E-09
IPR001356
CDD
cd00086
553 614 62 8.94E-13 –
SUPERFAMILY
SSF46689
555 620 66 9.84E-17
IPR009057
Gene3D
G3DSA:1.10.10.60
556 619 64 3.50E-28
IPR009057
Pfam
PF05920
570 609 40 6.80E-18
IPR008422
Coils
Coil
619 649 31 – –
MobiDBLite
mobidb-lite
624 684 61 – –
MobiDBLite
mobidb-lite
710 733 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v0911380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0911380.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.