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Lj4g3v0961090.1

Overview

Field Value
Gene ID Lj4g3v0961090
Transcript ID Lj4g3v0961090.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable ADP-ribosylation factor At2g18390-like [Glycine max] gi|356496769|ref|XP_003517238.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11711
1 183 183 3.50E-93 –
SMART
SM00177
1 181 181 1.10E-50 –
SMART
SM00178
3 177 175 7.00E-22 –
CDD
cd04154
3 176 174 9.59E-111 –
Gene3D
G3DSA:3.40.50.300
4 177 174 2.70E-60
IPR027417
Pfam
PF00025
4 177 174 3.40E-69
IPR006689
ProSiteProfiles
PS51417
10 177 168 21.618
IPR024156
SUPERFAMILY
SSF52540
13 179 167 4.70E-50
IPR027417
TIGRFAM
TIGR00231
15 150 136 1.50E-18
IPR005225
SMART
SM00175
17 180 164 0.0037 –
PRINTS
PR00328
18 41 24 1.20E-16
IPR006689
PRINTS
PR00328
46 70 25 1.20E-16
IPR006689
PRINTS
PR00328
73 98 26 1.20E-16
IPR006689
PRINTS
PR00328
151 175 25 1.20E-16
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 25

Expression data

Expression pattern

Expression pattern of Lj4g3v0961090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0961090.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.