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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1037760 |
| Transcript ID | Lj4g3v1037760.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cold shock protein 1-like [Cicer arietinum] gi|502153508|ref|XP_004509364.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 245 | 245 | 1.70E-111 | – | |
| PANTHER | 1 | 245 | 245 | 1.70E-111 | – | |
| SUPERFAMILY | 4 | 73 | 70 | 7.07E-21 | ||
| Gene3D | 7 | 70 | 64 | 2.80E-24 | – | |
| SMART | 7 | 72 | 66 | 1.20E-23 | ||
| Pfam | 7 | 71 | 65 | 9.80E-24 | ||
| CDD | 8 | 71 | 64 | 2.28E-25 | ||
| PRINTS | 8 | 23 | 16 | 7.80E-12 | ||
| ProSitePatterns | 19 | 38 | 20 | – | ||
| PRINTS | 29 | 38 | 10 | 7.80E-12 | ||
| PRINTS | 44 | 62 | 19 | 7.80E-12 | ||
| MobiDBLite | 65 | 100 | 36 | – | – | |
| SUPERFAMILY | 100 | 153 | 54 | 5.23E-10 | ||
| Pfam | 109 | 123 | 15 | 3.10E-06 | ||
| SMART | 109 | 125 | 17 | 4.50E-04 | ||
| Gene3D | 110 | 143 | 34 | 1.30E-11 | ||
| ProSiteProfiles | 110 | 123 | 14 | 11.004 | ||
| SMART | 137 | 153 | 17 | 8.20E-04 | ||
| Pfam | 137 | 152 | 16 | 4.50E-06 | ||
| ProSiteProfiles | 138 | 151 | 14 | 10.147 | ||
| Gene3D | 144 | 173 | 30 | 1.80E-11 | ||
| SUPERFAMILY | 158 | 210 | 53 | 4.32E-08 | ||
| SMART | 166 | 182 | 17 | 2.70E-04 | ||
| Pfam | 167 | 181 | 15 | 2.20E-06 | ||
| ProSiteProfiles | 167 | 180 | 14 | 10.361 | ||
| Gene3D | 174 | 210 | 37 | 8.90E-14 | ||
| SMART | 195 | 211 | 17 | 1.50E-04 | ||
| Pfam | 195 | 210 | 16 | 7.20E-07 | ||
| ProSiteProfiles | 196 | 209 | 14 | 10.79 | ||
| SUPERFAMILY | 217 | 241 | 25 | 1.78E-07 | ||
| Gene3D | 223 | 240 | 18 | 3.10E-06 | ||
| Pfam | 225 | 240 | 16 | 1.50E-07 | ||
| SMART | 226 | 242 | 17 | 1.30E-05 | ||
| ProSiteProfiles | 227 | 240 | 14 | 11.021 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v1037760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1037760.1, powered by CORGI.
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