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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1151870 |
| Transcript ID | Lj4g3v1151870.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Ribose-phosphate pyrophosphokinase [Medicago truncatula] gi|357476731|ref|XP_003608651.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 31 | 31 | – | – | |
| Phobius | 1 | 14 | 14 | – | – | |
| Phobius | 15 | 26 | 12 | – | – | |
| Phobius | 27 | 31 | 5 | – | – | |
| Phobius | 32 | 406 | 375 | – | – | |
| PANTHER | 85 | 406 | 322 | 3.90E-277 | – | |
| PANTHER | 85 | 406 | 322 | 3.90E-277 | – | |
| Gene3D | 94 | 251 | 158 | 7.20E-71 | ||
| Hamap | 96 | 406 | 311 | 48.254 | ||
| Pfam | 96 | 212 | 117 | 3.70E-48 | ||
| SMART | 96 | 212 | 117 | 4.20E-77 | – | |
| TIGRFAM | 97 | 406 | 310 | 4.60E-120 | ||
| SUPERFAMILY | 161 | 397 | 237 | 9.30E-61 | ||
| ProSitePatterns | 220 | 235 | 16 | – | ||
| Gene3D | 252 | 374 | 123 | 2.40E-50 | ||
| CDD | 255 | 367 | 113 | 1.19E-24 | ||
| Pfam | 298 | 405 | 108 | 9.00E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Ribose phosphate diphosphokinase activity | Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | Ribonucleoside monophosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. | ||
| Biological process | Nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of Lj4g3v1151870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1151870.1, powered by CORGI.
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