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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1223860 |
| Transcript ID | Lj4g3v1223860.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | R2R3-MYB transcription factor LjPAP [Lotus japonicus] gi|224994132|dbj|BAH28879.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 11 | 63 | 53 | 17.775 | ||
| PANTHER | 11 | 121 | 111 | 6.60E-88 | – | |
| PANTHER | 11 | 121 | 111 | 6.60E-88 | – | |
| SUPERFAMILY | 14 | 110 | 97 | 7.34E-30 | ||
| SMART | 15 | 65 | 51 | 8.70E-16 | ||
| Pfam | 16 | 63 | 48 | 3.10E-17 | ||
| Gene3D | 18 | 70 | 53 | 1.90E-24 | ||
| CDD | 19 | 63 | 45 | 3.58E-11 | – | |
| ProSiteProfiles | 64 | 118 | 55 | 24.975 | ||
| SMART | 68 | 116 | 49 | 3.10E-14 | ||
| Pfam | 69 | 114 | 46 | 4.20E-15 | ||
| Gene3D | 71 | 119 | 49 | 8.40E-26 | ||
| CDD | 73 | 114 | 42 | 3.11E-11 | – | |
| PANTHER | 138 | 197 | 60 | 6.60E-88 | – | |
| PANTHER | 138 | 197 | 60 | 6.60E-88 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of Lj4g3v1223860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1223860.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.