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Lj4g3v1630970.1

Overview

Field Value
Gene ID Lj4g3v1630970
Transcript ID Lj4g3v1630970.1
Lotus japonicus genome version MG20 v3.0
Description R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330294|gb|AFK29425.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF641
1 73 73 3.30E-102 –
ProSiteProfiles
PS50090
1 15 15 4.449
IPR017877
PANTHER
PTHR10641
1 73 73 3.30E-102 –
Gene3D
G3DSA:1.10.10.60
2 26 25 1.50E-10
IPR009057
SUPERFAMILY
SSF46689
2 78 77 2.99E-21
IPR009057
ProSiteProfiles
PS51294
16 70 55 23.254
IPR017930
SMART
SM00717
20 68 49 3.80E-15
IPR001005
Pfam
PF00249
21 66 46 1.80E-14
IPR001005
CDD
cd00167
23 66 44 2.07E-10 –
Gene3D
G3DSA:1.10.10.60
27 70 44 1.60E-20
IPR009057
MobiDBLite
mobidb-lite
70 100 31 – –
PANTHER
PTHR10641
96 262 167 3.30E-102 –
PANTHER
PTHR10641:SF641
96 262 167 3.30E-102 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v1630970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1630970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.