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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1813520 |
| Transcript ID | Lj4g3v1813520.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gi|357477907|ref|XP_003609239.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 130 | 130 | – | – | |
| MobiDBLite | 1 | 41 | 41 | – | – | |
| PANTHER | 8 | 252 | 245 | 1.90E-168 | ||
| PANTHER | 8 | 252 | 245 | 1.90E-168 | – | |
| ProSiteProfiles | 44 | 109 | 66 | 22.018 | ||
| SUPERFAMILY | 49 | 107 | 59 | 4.24E-13 | – | |
| Gene3D | 49 | 108 | 60 | 1.50E-17 | ||
| SMART | 51 | 103 | 53 | 2.70E-18 | ||
| Pfam | 52 | 102 | 51 | 3.50E-12 | ||
| TMHMM | 130 | 152 | 23 | – | – | |
| Phobius | 131 | 152 | 22 | – | – | |
| Phobius | 153 | 175 | 23 | – | – | |
| TMHMM | 175 | 197 | 23 | – | – | |
| Phobius | 176 | 199 | 24 | – | – | |
| Phobius | 200 | 230 | 31 | – | – | |
| TMHMM | 227 | 249 | 23 | – | – | |
| Phobius | 231 | 250 | 20 | – | – | |
| Phobius | 251 | 252 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v1813520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1813520.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.