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Lj4g3v1877050.1

Overview

Field Value
Gene ID Lj4g3v1877050
Transcript ID Lj4g3v1877050.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 52B-like [Glycine max] gi|356565189|ref|XP_003550826.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031:SF235
1 27 27 8.10E-258 –
CDD
cd00268
1 185 185 1.59E-74 –
PANTHER
PTHR24031
1 27 27 8.10E-258 –
ProSiteProfiles
PS51192
1 184 184 26.995
IPR014001
Gene3D
G3DSA:3.40.50.300
1 197 197 5.30E-65
IPR027417
SMART
SM00487
2 199 198 5.20E-41
IPR014001
Pfam
PF00270
2 173 172 1.50E-43
IPR011545
PANTHER
PTHR24031:SF235
47 435 389 8.10E-258 –
PANTHER
PTHR24031
47 435 389 8.10E-258 –
SUPERFAMILY
SSF52540
49 335 287 3.74E-72
IPR027417
Gene3D
G3DSA:3.40.50.300
198 360 163 1.60E-51
IPR027417
Pfam
PF00271
208 323 116 7.00E-30
IPR001650
ProSiteProfiles
PS51194
222 363 142 23.162
IPR001650
CDD
cd00079
231 328 98 3.89E-38 –
SMART
SM00490
242 323 82 2.70E-35
IPR001650
MobiDBLite
mobidb-lite
362 388 27 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v1877050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1877050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.