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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1881460 |
| Transcript ID | Lj4g3v1881460.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g14850-like [Cicer arietinum] gi|502119730|ref|XP_004496720.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 556 | 540 | 0 | – | |
| PANTHER | 17 | 556 | 540 | 0 | – | |
| ProSiteProfiles | 72 | 106 | 35 | 9.624 | ||
| Pfam | 72 | 117 | 46 | 7.90E-08 | ||
| TIGRFAM | 74 | 107 | 34 | 2.00E-04 | ||
| ProSiteProfiles | 142 | 176 | 35 | 7.092 | ||
| ProSiteProfiles | 208 | 242 | 35 | 5.864 | ||
| ProSiteProfiles | 243 | 273 | 31 | 6.325 | ||
| Gene3D | 274 | 424 | 151 | 1.70E-05 | ||
| ProSiteProfiles | 276 | 310 | 35 | 6.862 | ||
| ProSiteProfiles | 345 | 375 | 31 | 8.407 | ||
| Pfam | 376 | 424 | 49 | 9.90E-10 | ||
| ProSiteProfiles | 376 | 410 | 35 | 10.918 | ||
| TIGRFAM | 378 | 404 | 27 | 3.10E-07 | ||
| ProSiteProfiles | 413 | 443 | 31 | 7.607 | ||
| ProSiteProfiles | 449 | 479 | 31 | 6.456 | ||
| Gene3D | 496 | 541 | 46 | 1.70E-05 | ||
| ProSiteProfiles | 515 | 549 | 35 | 8.068 | ||
| Pfam | 524 | 547 | 24 | 0.29 | ||
| Pfam | 552 | 675 | 124 | 6.40E-40 | ||
| Coils | 568 | 588 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v1881460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1881460.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.