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Lj4g3v1983680.1

Overview

Field Value
Gene ID Lj4g3v1983680
Transcript ID Lj4g3v1983680.1
Lotus japonicus genome version MG20 v3.0
Description HVA22-like protein a [Medicago truncatula] gi|357476185|ref|XP_003608378.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF12874
2 22 21 4.00E-04 –
SMART
SM00451
2 29 28 2.3
IPR003604
PANTHER
PTHR23067
3 280 278 5.10E-35 –
PANTHER
PTHR23067:SF43
3 280 278 5.10E-35 –
SUPERFAMILY
SSF57667
113 158 46 4.91E-08 –
SMART
SM00451
121 155 35 0.13
IPR003604
SMART
SM00355
124 148 25 9.3
IPR015880
Pfam
PF12874
125 148 24 2.40E-04 –
SUPERFAMILY
SSF57667
242 284 43 7.14E-08 –
SMART
SM00451
247 281 35 0.13
IPR003604
SMART
SM00355
250 274 25 9.3
IPR015880
Pfam
PF12874
251 274 24 2.40E-04 –
SUPERFAMILY
SSF57667
371 409 39 1.03E-06 –
SMART
SM00451
372 406 35 0.38
IPR003604
SMART
SM00355
375 399 25 6.2
IPR015880
Pfam
PF12874
376 399 24 9.50E-05 –
SUPERFAMILY
SSF57667
499 539 41 9.09E-08 –
SMART
SM00451
504 538 35 0.04
IPR003604
SMART
SM00355
507 531 25 6.5
IPR015880
Pfam
PF12874
507 531 25 1.20E-04 –
PANTHER
PTHR23067:SF43
559 660 102 5.10E-35 –
PANTHER
PTHR23067
559 660 102 5.10E-35 –
SMART
SM00451
628 662 35 0.0097
IPR003604
SUPERFAMILY
SSF57667
628 661 34 4.66E-08 –
SMART
SM00355
631 655 25 11
IPR015880
Pfam
PF12874
632 655 24 4.80E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj4g3v1983680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1983680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.