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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2000910 |
| Transcript ID | Lj4g3v2000910.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g30700-like [Cicer arietinum] gi|502150031|ref|XP_004507756.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 301 | 284 | 0 | – | |
| PANTHER | 18 | 301 | 284 | 0 | – | |
| ProSiteProfiles | 66 | 101 | 36 | 6.555 | ||
| ProSiteProfiles | 134 | 164 | 31 | 8.035 | ||
| Pfam | 137 | 164 | 28 | 0.058 | ||
| Pfam | 165 | 211 | 47 | 7.80E-09 | ||
| ProSiteProfiles | 165 | 199 | 35 | 10.775 | ||
| TIGRFAM | 167 | 200 | 34 | 4.60E-07 | ||
| ProSiteProfiles | 235 | 265 | 31 | 5.853 | ||
| ProSiteProfiles | 266 | 300 | 35 | 10.161 | ||
| Pfam | 269 | 297 | 29 | 1.40E-05 | ||
| TIGRFAM | 269 | 297 | 29 | 1.10E-04 | ||
| ProSiteProfiles | 336 | 366 | 31 | 6.27 | ||
| PANTHER | 337 | 646 | 310 | 0 | – | |
| PANTHER | 337 | 646 | 310 | 0 | – | |
| Gene3D | 342 | 471 | 130 | 2.30E-07 | ||
| ProSiteProfiles | 367 | 401 | 35 | 11.63 | ||
| Pfam | 367 | 414 | 48 | 8.50E-11 | ||
| TIGRFAM | 370 | 402 | 33 | 3.60E-08 | ||
| ProSiteProfiles | 402 | 436 | 35 | 7.947 | ||
| ProSiteProfiles | 437 | 467 | 31 | 9.525 | ||
| TIGRFAM | 442 | 468 | 27 | 5.90E-05 | ||
| Pfam | 467 | 514 | 48 | 8.50E-11 | ||
| ProSiteProfiles | 468 | 502 | 35 | 12.266 | ||
| TIGRFAM | 470 | 503 | 34 | 1.50E-07 | ||
| ProSiteProfiles | 503 | 533 | 31 | 8.002 | ||
| TIGRFAM | 505 | 533 | 29 | 0.0019 | ||
| ProSiteProfiles | 539 | 569 | 31 | 6.062 | ||
| Gene3D | 540 | 628 | 89 | 2.30E-07 | ||
| Pfam | 545 | 566 | 22 | 0.34 | ||
| Pfam | 641 | 765 | 125 | 1.20E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v2000910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2000910.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.