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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2120330 |
| Transcript ID | Lj4g3v2120330.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Glycine max] gi|356546106|ref|XP_003541472.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | – | – | |
| SignalP | 1 | 18 | 18 | – | – | |
| Phobius | 1 | 18 | 18 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| CDD | 13 | 65 | 53 | 7.70E-13 | ||
| Phobius | 13 | 18 | 6 | – | – | |
| SMART | 13 | 70 | 58 | 5.20E-06 | ||
| ProSiteProfiles | 15 | 64 | 50 | 11.719 | ||
| Phobius | 19 | 345 | 327 | – | – | |
| SUPERFAMILY | 28 | 65 | 38 | 5.43E-10 | ||
| Gene3D | 31 | 64 | 34 | 1.10E-09 | ||
| PANTHER | 32 | 345 | 314 | 1.10E-162 | ||
| PANTHER | 32 | 345 | 314 | 1.10E-162 | – | |
| SUPERFAMILY | 99 | 160 | 62 | 4.77E-18 | ||
| CDD | 99 | 160 | 62 | 6.25E-26 | ||
| Pfam | 99 | 150 | 52 | 2.00E-11 | ||
| SMART | 100 | 164 | 65 | 6.00E-33 | ||
| Gene3D | 100 | 159 | 60 | 5.30E-18 | ||
| ProSiteProfiles | 100 | 158 | 59 | 18.834 | ||
| PRINTS | 101 | 112 | 12 | 9.90E-05 | ||
| PRINTS | 140 | 160 | 21 | 9.90E-05 | ||
| MobiDBLite | 173 | 214 | 42 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj4g3v2120330.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2120330.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.