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Lj4g3v2140210.1

Overview

Field Value
Gene ID Lj4g3v2140210
Transcript ID Lj4g3v2140210.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max] gi|356550712|ref|XP_003543728.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326
15 181 167 6.20E-77 –
PANTHER
PTHR24326:SF206
15 181 167 6.20E-77 –
SUPERFAMILY
SSF46689
49 123 75 5.99E-18
IPR009057
Gene3D
G3DSA:1.10.10.60
51 116 66 1.90E-17
IPR009057
ProSiteProfiles
PS50071
62 122 61 16.082
IPR001356
SMART
SM00389
64 126 63 4.60E-15
IPR001356
Pfam
PF00046
66 120 55 9.70E-16
IPR001356
CDD
cd00086
66 123 58 7.02E-12 –
ProSitePatterns
PS00027
97 120 24 –
IPR017970
Coils
Coil
114 155 42 – –
SMART
SM00340
122 165 44 1.40E-14
IPR003106

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v2140210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2140210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.