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Lj4g3v2180390.1

Overview

Field Value
Gene ID Lj4g3v2180390
Transcript ID Lj4g3v2180390.1
Lotus japonicus genome version MG20 v3.0
Description Growth-regulating factor 5 isoform 3 [Theobroma cacao] gi|508783032|gb|EOY30288.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31602:SF4
1 380 380 5.00E-169 –
PANTHER
PTHR31602
1 380 380 5.00E-169
IPR031137
SMART
SM00951
9 45 37 2.90E-10
IPR014978
ProSiteProfiles
PS51666
10 45 36 21.416
IPR014978
Pfam
PF08880
10 43 34 5.10E-14
IPR014978
ProSiteProfiles
PS51667
75 119 45 24.98
IPR014977
Pfam
PF08879
76 118 43 1.30E-20
IPR014977
MobiDBLite
mobidb-lite
145 196 52 – –
MobiDBLite
mobidb-lite
260 287 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0032502
Biological process Developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj4g3v2180390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2180390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.