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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014977
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 36 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.927s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0198589.1
n.a. Growth-regulating factor 5 isoform 3 [Theobroma cacao] gi|508783032|gb|EOY30288.1| chr0 96956722 96959381 -
3 domain predictions
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Lj0g3v0266619.1
n.a. PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| chr0 138100557 138105880 -
3 domain predictions
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Lj0g3v0275479.1
n.a. n.a. chr0 142893835 142896923 +
3 domain predictions
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Lj0g3v0275489.2
n.a. Uncharacterized protein TCM_024932 [Theobroma cacao] gi|508717619|gb|EOY09516.1| chr0 142894264 142896923 -
3 domain predictions
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Lj1g3v0725880.1
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357436481|ref|XP_003588516.1| chr1 9606005 9608750 +
2 domain predictions
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Lj1g3v1049410.1
n.a. Growth-regulating factor [Medicago truncatula] gi|357464113|ref|XP_003602338.1| chr1 13080031 13082676 +
3 domain predictions
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Lj1g3v4328790.1
n.a. Uncharacterized protein TCM_024932 [Theobroma cacao] gi|508717619|gb|EOY09516.1| chr1 50930442 50951932 -
3 domain predictions
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Lj1g3v4699740.1
n.a. PREDICTED: growth-regulating factor 3-like [Cicer arietinum] gi|502111733|ref|XP_004494150.1| chr1 56043867 56047635 +
3 domain predictions
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Lj2g3v1537380.1
n.a. PREDICTED: growth-regulating factor 5-like isoform X1 [Cicer arietinum] gi|502162164|ref|XP_004512413.1| chr2 24225209 24228457 +
3 domain predictions
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Lj3g3v2591390.1
n.a. PREDICTED: growth-regulating factor 5-like isoform X2 [Cicer arietinum] gi|502156422|ref|XP_004510466.1| chr3 32125985 32128071 -
3 domain predictions
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Lj3g3v2723650.1
n.a. PREDICTED: growth-regulating factor 9-like isoform X1 [Cicer arietinum] gi|502157860|ref|XP_004510935.1| chr3 33505290 33508613 -
3 domain predictions
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Lj3g3v3639790.1
n.a. PREDICTED: growth-regulating factor 4-like isoform X2 [Cicer arietinum] gi|502146660|ref|XP_004506550.1| chr3 44242841 44246782 -
3 domain predictions
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Lj4g3v2180390.1
n.a. Growth-regulating factor 5 isoform 3 [Theobroma cacao] gi|508783032|gb|EOY30288.1| chr4 30203214 30205572 -
3 domain predictions
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Lj5g3v0324520.1
n.a. PREDICTED: growth-regulating factor 6-like [Cicer arietinum] gi|502125511|ref|XP_004498953.1| chr5 3297368 3302132 -
3 domain predictions
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Lj6g3v0918840.1
n.a. Zinc finger, RING-type; Transcription factor jumonji, jmjC; Zinc finger, C2H2-type [Medicago truncatula] gi|124359679|gb|ABN06047.1| chr6 9002499 9003228 -
3 domain predictions
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Lj6g3v1201190.1
n.a. Growth-regulating factor 5 isoform 3 [Theobroma cacao] gi|508783032|gb|EOY30288.1| chr6 14811347 14813520 +
3 domain predictions
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LotjaGi1g1v0224300.1
n.a. Transcription factor jumonji domain-containing protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7M755|K7M755_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224300 LjG1.1_chr1 50808555 50839615 -
2 domain predictions
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LotjaGi1g1v0294700.1
n.a. Growth-regulating factor; TAIR: AT4G37740.1 growth-regulating factor 2; Swiss-Prot: sp|Q8L8A8|GRF2_ARATH Growth-regulating factor 2; TrEMBL-Plants: tr|A0A0L9UDP8|A0A0L9UDP8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0294700 LjG1.1_chr1 71430963 71433999 +
3 domain predictions
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LotjaGi1g1v0679000.1
n.a. Growth-regulating factor; TAIR: AT3G52910.1 growth-regulating factor 4; Swiss-Prot: sp|Q8L8A7|GRF4_ARATH Growth-regulating factor 4; TrEMBL-Plants: tr|V7CXL5|V7CXL5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0679000 LjG1.1_chr1 124563153 124574880 -
3 domain predictions
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LotjaGi1g1v0726900.1
n.a. Growth-regulating factor; TAIR: AT2G42040.1 WRC protein; Swiss-Prot: sp|Q9FJB8|GRF7_ARATH Growth-regulating factor 7; TrEMBL-Plants: tr|A0A1J7G4P0|A0A1J7G4P0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0726900 LjG1.1_chr1 129781099 129783758 -
3 domain predictions
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LotjaGi2g1v0342300.2
n.a. Growth-regulating factor; TAIR: AT4G37740.1 growth-regulating factor 2; Swiss-Prot: sp|Q6AWY6|GRF3_ORYSJ Growth-regulating factor 3; TrEMBL-Plants: tr|K7K3Y3|K7K3Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0342300 LjG1.1_chr2 81950825 81956540 +
3 domain predictions
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LotjaGi3g1v0379600.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A151SZ92|A0A151SZ92_CAJCA Lysine-specific demethylase 3B; Found in the gene: LotjaGi3g1v0379600 LjG1.1_chr3 77225752 77232674 -
3 domain predictions
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LotjaGi3g1v0415100.1
n.a. Growth-regulating factor-like protein; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q8L8A6|GRF5_ARATH Growth-regulating factor 5; TrEMBL-Plants: tr|A0A0S3SZU0|A0A0S3SZU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0415100 LjG1.1_chr3 82038003 82041583 +
3 domain predictions
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LotjaGi3g1v0431300.1
n.a. Growth-regulating factor; TAIR: AT2G45480.1 growth-regulating factor 9; Swiss-Prot: sp|Q8S9M3|GRF9_ARATH Growth-regulating factor 9; TrEMBL-Plants: tr|A0A0R0KKP4|A0A0R0KKP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0431300 LjG1.1_chr3 84300475 84303881 -
3 domain predictions
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LotjaGi3g1v0543400.1
n.a. Growth-regulating factor; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q6AWY4|GRF5_ORYSJ Growth-regulating factor 5; TrEMBL-Plants: tr|I1LP40|I1LP40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0543400 LjG1.1_chr3 95954945 95959316 -
3 domain predictions
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LotjaGi3g1v0543400.2
n.a. Growth-regulating factor; TAIR: AT4G37740.1 growth-regulating factor 2; Swiss-Prot: sp|Q6AWY4|GRF5_ORYSJ Growth-regulating factor 5; TrEMBL-Plants: tr|I1LP40|I1LP40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0543400 LjG1.1_chr3 95955594 95959082 -
3 domain predictions
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LotjaGi4g1v0047800.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G21430.1 protein B160; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|I1KQR1|I1KQR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0047800 LjG1.1_chr4 5756072 5762303 +
3 domain predictions
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LotjaGi4g1v0326100.1
n.a. Growth-regulating factor-like protein; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q6ZIK5|GRF4_ORYSJ Growth-regulating factor 4; TrEMBL-Plants: tr|V7CCG7|V7CCG7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0326100 LjG1.1_chr4 70457915 70464203 +
3 domain predictions
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LotjaGi5g1v0036300.1
n.a. Growth-regulating factor; TAIR: AT2G22840.1 growth-regulating factor 1; Swiss-Prot: sp|Q6AWY3|GRF6_ORYSJ Growth-regulating factor 6; TrEMBL-Plants: tr|A0A072VEY4|A0A072VEY4_MEDTR Growth-regulating factor; Found in the gene: LotjaGi5g1v0036300 LjG1.1_chr5 5981954 5988588 -
3 domain predictions
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LotjaGi5g1v0117600.1
n.a. Growth-regulating factor; TAIR: AT2G42040.1 WRC protein; Swiss-Prot: sp|Q9FRG8|GRF9_ORYSJ Growth-regulating factor 9; TrEMBL-Plants: tr|A0A151QTU9|A0A151QTU9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0117600 LjG1.1_chr5 24185394 24188739 -
3 domain predictions
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LotjaGi5g1v0222200.1
n.a. Transcription factor jumonji domain protein; TAIR: AT1G09060.3 JmjC domain protein JMJ24; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|G7I8M9|G7I8M9_MEDTR Transcription factor jumonji domain protein; Found in the gene: LotjaGi5g1v0222200 LjG1.1_chr5 52908337 52916977 -
3 domain predictions
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LotjaGi6g1v0164500_LC.1
n.a. Growth-regulating factor; TAIR: AT4G21430.1 protein B160; Swiss-Prot: sp|Q6AWY3|GRF6_ORYSJ Growth-regulating factor 6; TrEMBL-Plants: tr|V7BT86|V7BT86_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0164500_LC LjG1.1_chr6 44868993 44869763 -
3 domain predictions
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LotjaGi6g1v0164600_LC.1
n.a. Growth-regulating factor; TAIR: AT4G24150.1 growth-regulating factor 8; Swiss-Prot: sp|Q9SU44|GRF8_ARATH Growth-regulating factor 8; TrEMBL-Plants: tr|A0A1J7HCG3|A0A1J7HCG3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0164600_LC LjG1.1_chr6 44870641 44871242 -
3 domain predictions
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LotjaGi6g1v0164800_LC.1
n.a. Growth-regulating factor; TAIR: AT4G21430.1 protein B160; Swiss-Prot: sp|Q6AWX8|GRF11_ORYSJ Growth-regulating factor 11; TrEMBL-Plants: tr|A0A0L9VG03|A0A0L9VG03_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0164800_LC LjG1.1_chr6 44882583 44883371 -
3 domain predictions
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LotjaGi6g1v0225700.1
n.a. Growth-regulating factor-like protein; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q8L8A6|GRF5_ARATH Growth-regulating factor 5; TrEMBL-Plants: tr|V7B1C9|V7B1C9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0225700 LjG1.1_chr6 53152491 53155272 +
3 domain predictions
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LotjaGi6g1v0340100.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G21430.1 protein B160; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|V7BT86|V7BT86_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0340100 LjG1.1_chr6 65392215 65403588 -
3 domain predictions
 –