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Lj4g3v2214790.1

Overview

Field Value
Gene ID Lj4g3v2214790
Transcript ID Lj4g3v2214790.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 20 kDa chaperonin, chloroplastic-like [Cicer arietinum] gi|502086108|ref|XP_004488111.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF038157
1 239 239 1.10E-127
IPR017416
PANTHER
PTHR10772:SF0
2 163 162 3.00E-95 –
PANTHER
PTHR10772
2 163 162 3.00E-95
IPR020818
SUPERFAMILY
SSF50129
61 154 94 7.30E-29
IPR011032
Hamap
MF_00580
62 154 93 23.361
IPR020818
SMART
SM00883
62 153 92 9.10E-42
IPR020818
Gene3D
G3DSA:2.30.33.40
62 154 93 3.70E-32
IPR020818
Pfam
PF00166
63 152 90 5.70E-30
IPR020818
CDD
cd00320
63 153 91 4.51E-36
IPR020818
PRINTS
PR00297
63 78 16 4.20E-26
IPR020818
ProSitePatterns
PS00681
63 87 25 –
IPR018369
PRINTS
PR00297
85 106 22 4.20E-26
IPR020818
PRINTS
PR00297
119 131 13 4.20E-26
IPR020818
PRINTS
PR00297
140 153 14 4.20E-26
IPR020818
SMART
SM00883
160 237 78 2.80E-24
IPR020818
SUPERFAMILY
SSF50129
160 236 77 2.83E-21
IPR011032
Gene3D
G3DSA:2.30.33.40
160 237 78 5.70E-27
IPR020818
ProSitePatterns
PS00681
161 185 25 –
IPR018369
Pfam
PF00166
161 236 76 4.10E-22
IPR020818
CDD
cd00320
161 234 74 3.13E-26
IPR020818

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0046914
Molecular function Transition metal ion binding Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
Subterm of
GO:1901671
Biological process Positive regulation of superoxide dismutase activity Any process that activates or increases the frequency, rate or extent of superoxide dismutase activity.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj4g3v2214790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2214790.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.